KXB86341.1 protein (Veillonella dispar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KXB86341.1

KEGG: vpr:Vpar_0959 1.4e-168 DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 8.96. (330 aa)

Predicted Functional Partners:

KXB85481.1

0.989

DnaX_1

0.989

DnaE

0.987

DnaN

0.987

polC

0.986

PolC_1

0.945

KXB86340.1

0.909

KXB86339.1

0.823

KXB83917.1

0.778

KXB83808.1

0.774

Your Current Organism:

Veillonella dispar

NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DnaE	DnaN	HMPREF1867_01204	HMPREF1867_01665	KEGG: vpr:Vpar_1406 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.987
DnaE	DnaX_1	HMPREF1867_01204	HMPREF1867_01610	KEGG: vpr:Vpar_1406 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	0.976
DnaE	KXB85481.1	HMPREF1867_01204	HMPREF1867_01110	KEGG: vpr:Vpar_1406 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.	KEGG: vpr:Vpar_1636 0. DNA polymerase III subunits gamma/tau; K02343 DNA polymerase III subunit gamma/tau; Psort location: Cytoplasmic, score: 9.54.	0.982
DnaE	KXB86341.1	HMPREF1867_01204	HMPREF1867_00908	KEGG: vpr:Vpar_1406 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.	KEGG: vpr:Vpar_0959 1.4e-168 DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 8.96.	0.987
DnaE	PolC_1	HMPREF1867_01204	HMPREF1867_00645	KEGG: vpr:Vpar_1406 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.	DNA polymerase III, epsilon subunit domain protein; KEGG: vpr:Vpar_0406 1.1e-108 exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 9.97.	0.978
DnaE	polC	HMPREF1867_01204	HMPREF1867_00909	KEGG: vpr:Vpar_1406 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.	DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.927
DnaN	DnaE	HMPREF1867_01665	HMPREF1867_01204	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	KEGG: vpr:Vpar_1406 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.	0.987
DnaN	DnaX_1	HMPREF1867_01665	HMPREF1867_01610	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	0.981
DnaN	KXB85481.1	HMPREF1867_01665	HMPREF1867_01110	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	KEGG: vpr:Vpar_1636 0. DNA polymerase III subunits gamma/tau; K02343 DNA polymerase III subunit gamma/tau; Psort location: Cytoplasmic, score: 9.54.	0.981
DnaN	KXB86341.1	HMPREF1867_01665	HMPREF1867_00908	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	KEGG: vpr:Vpar_0959 1.4e-168 DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 8.96.	0.987
DnaN	PolC_1	HMPREF1867_01665	HMPREF1867_00645	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase III, epsilon subunit domain protein; KEGG: vpr:Vpar_0406 1.1e-108 exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 9.97.	0.973
DnaN	polC	HMPREF1867_01665	HMPREF1867_00909	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.934
DnaX_1	DnaE	HMPREF1867_01610	HMPREF1867_01204	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	KEGG: vpr:Vpar_1406 0. DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.	0.976
DnaX_1	DnaN	HMPREF1867_01610	HMPREF1867_01665	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.981
DnaX_1	KXB83808.1	HMPREF1867_01610	HMPREF1867_01646	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.	0.530
DnaX_1	KXB85481.1	HMPREF1867_01610	HMPREF1867_01110	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	KEGG: vpr:Vpar_1636 0. DNA polymerase III subunits gamma/tau; K02343 DNA polymerase III subunit gamma/tau; Psort location: Cytoplasmic, score: 9.54.	0.933
DnaX_1	KXB86341.1	HMPREF1867_01610	HMPREF1867_00908	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	KEGG: vpr:Vpar_0959 1.4e-168 DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 8.96.	0.989
DnaX_1	PolC_1	HMPREF1867_01610	HMPREF1867_00645	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	DNA polymerase III, epsilon subunit domain protein; KEGG: vpr:Vpar_0406 1.1e-108 exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 9.97.	0.951
DnaX_1	polC	HMPREF1867_01610	HMPREF1867_00909	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.907
KXB83808.1	DnaX_1	HMPREF1867_01646	HMPREF1867_01610	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.	Hypothetical protein; KEGG: vpr:Vpar_0612 4.1e-171 DNA polymerase III subunits gamma/tau; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.	0.530

page 1 of 4

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About