Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YoaEIntegral membrane protein, YjbE family; KEGG: apb:SAR116_0773 5.9e-37 integral membrane protein TerC; Psort location: CytoplasmicMembrane, score: 10.00. (222 aa)    
Predicted Functional Partners:
RlmCD
KEGG: vpr:Vpar_0714 5.4e-233 TrmA family RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.777
KXB84015.1
Integral membrane protein, YjbE family; KEGG: apb:SAR116_0773 8.2e-47 integral membrane protein TerC; Psort location: CytoplasmicMembrane, score: 10.00.
 
    
0.503
KXB84012.1
Hypothetical protein.
       0.480
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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