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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MetEKEGG: pdn:HMPREF9137_0954 2.1e-144 methionine synthase, vitamin-B12 independent; Psort location: Cytoplasmic, score: 8.96. (373 aa)    
Predicted Functional Partners:
MetH
KEGG: vpr:Vpar_1850 0. homocysteine S-methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.976
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 0.973
MetB
Putative cystathionine beta-lyase; KEGG: vpr:Vpar_0266 4.2e-194 Cys/Met metabolism pyridoxal-phosphate-dependent protein; K01760 cystathionine beta-lyase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.968
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
  
 
 0.968
MmuM
KEGG: vpr:Vpar_0359 6.4e-166 homocysteine S-methyltransferase; K00547 homocysteine S-methyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.937
MdeA
KEGG: vpr:Vpar_0269 8.5e-219 O-acetylhomoserine/O-acetylserine sulfhydrylase; K01740 O-acetylhomoserine (thiol)-lyase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.932
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.912
AspC_2
Aminotransferase, class I/II; KEGG: vpr:Vpar_1105 1.7e-211 class I and II aminotransferase; K00832 aromatic-amino-acid transaminase; Psort location: Cytoplasmic, score: 9.97.
     
 0.907
MetF
Homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase domain protein; KEGG: mas:Mahau_0258 1.6e-66 homocysteine S-methyltransferase; K00547 homocysteine S-methyltransferase; Psort location: Cytoplasmic, score: 8.96; Belongs to the methylenetetrahydrofolate reductase family.
  
 
 0.905
PatB_1
Putative hemolysin; KEGG: vpr:Vpar_0267 4.8e-209 class I and II aminotransferase; K14155 cystathione beta-lyase; Psort location: Cytoplasmic, score: 9.97.
     
  0.900
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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