node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMB78004.1 | SMB82269.1 | SAMN05660745_00507 | SAMN05660745_02598 | Site-specific recombinase XerD. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.411 |
SMB78004.1 | SMB85658.1 | SAMN05660745_00507 | SAMN05660745_01502 | Site-specific recombinase XerD. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.793 |
SMB78004.1 | ruvA | SAMN05660745_00507 | SAMN05660745_00638 | Site-specific recombinase XerD. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.588 |
SMB78004.1 | ruvB | SAMN05660745_00507 | SAMN05660745_00639 | Site-specific recombinase XerD. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.588 |
SMB78004.1 | ruvC | SAMN05660745_00507 | SAMN05660745_00636 | Site-specific recombinase XerD. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.588 |
SMB78004.1 | uvrB | SAMN05660745_00507 | SAMN05660745_02028 | Site-specific recombinase XerD. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.580 |
SMB82269.1 | SMB78004.1 | SAMN05660745_02598 | SAMN05660745_00507 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Site-specific recombinase XerD. | 0.411 |
SMB82269.1 | SMB85658.1 | SAMN05660745_02598 | SAMN05660745_01502 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.837 |
SMB82269.1 | ruvA | SAMN05660745_02598 | SAMN05660745_00638 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.588 |
SMB82269.1 | ruvB | SAMN05660745_02598 | SAMN05660745_00639 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.588 |
SMB82269.1 | ruvC | SAMN05660745_02598 | SAMN05660745_00636 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.588 |
SMB82269.1 | uvrB | SAMN05660745_02598 | SAMN05660745_02028 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.580 |
SMB83361.1 | SMB85658.1 | SAMN05660745_02644 | SAMN05660745_01502 | Integrase/recombinase XerD; Belongs to the 'phage' integrase family. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.681 |
SMB83361.1 | SMB86087.1 | SAMN05660745_02644 | SAMN05660745_01591 | Integrase/recombinase XerD; Belongs to the 'phage' integrase family. | Site-specific recombinase XerD. | 0.695 |
SMB83361.1 | ruvA | SAMN05660745_02644 | SAMN05660745_00638 | Integrase/recombinase XerD; Belongs to the 'phage' integrase family. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.588 |
SMB83361.1 | ruvB | SAMN05660745_02644 | SAMN05660745_00639 | Integrase/recombinase XerD; Belongs to the 'phage' integrase family. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.588 |
SMB83361.1 | ruvC | SAMN05660745_02644 | SAMN05660745_00636 | Integrase/recombinase XerD; Belongs to the 'phage' integrase family. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.588 |
SMB83361.1 | uvrB | SAMN05660745_02644 | SAMN05660745_02028 | Integrase/recombinase XerD; Belongs to the 'phage' integrase family. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.580 |
SMB85658.1 | SMB78004.1 | SAMN05660745_01502 | SAMN05660745_00507 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Site-specific recombinase XerD. | 0.793 |
SMB85658.1 | SMB82269.1 | SAMN05660745_01502 | SAMN05660745_02598 | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.837 |