Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_0005KEGG: ava:Ava_3273 putative type I restriction enzyme, R subunit. (119 aa)    
Predicted Functional Partners:
Aave_3359
PFAM: N-6 DNA methylase; KEGG: tbd:Tbd_2680 type I restriction-modification system methyltransferase subunit.
 
 
 0.890
Aave_3358
PFAM: restriction modification system DNA specificity domain; KEGG: fra:Francci3_4012 restriction modification system DNA specificity domain.
 
 
 0.876
Aave_0004
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: pca:Pcar_2730 putative transcriptional regulator.
 
    0.829
Aave_1379
PFAM: restriction endonuclease; KEGG: pol:Bpro_3356 restriction endonuclease.
  
  
 0.520
Aave_3831
PFAM: restriction endonuclease; KEGG: rfr:Rfer_1543 hypothetical protein.
 
  
 0.512
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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