STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0157PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cte:CT0906 DNA-dependent ATPase, SNF2 family protein. (1078 aa)    
Predicted Functional Partners:
Aave_0158
KEGG: cte:CT0907 hypothetical protein.
 
     0.955
Aave_0159
Site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bpm:BURPS1710b_0259 type III DNA modification methyltransferase.
 
   
 0.950
Aave_0162
PFAM: type III restriction enzyme, res subunit; KEGG: cte:CT0911 type III restriction system endonuclease.
 
     0.936
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.915
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.908
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.880
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.848
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.756
Aave_0161
PFAM: Appr-1-p processing domain protein; KEGG: neu:NE1364 Appr-1-p processing enzyme family.
   
   0.711
Aave_0156
TIGRFAM: DNA binding domain, excisionase family; KEGG: noc:Noc_0665 excisionase/Xis, DNA-binding.
       0.709
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.