STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0169PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_2232 major facilitator superfamily. (405 aa)    
Predicted Functional Partners:
Aave_0171
KEGG: xcv:XCV0233 putative secreted protein.
 
     0.806
Aave_0170
Hypothetical protein.
       0.509
Aave_3036
KEGG: bja:bll0419 hypothetical protein.
  
   
 0.492
Aave_0173
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: xom:XOO_3970 two-component system sensor protein.
 
     0.429
Aave_2847
Arsenite efflux membrane protein ArsB; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: rme:Rmet_3991 arsenical pump membrane protein; TC 3.A.4.1.1; TC 2.A.45.1.1.
 
   
 0.402
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.