Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_0180PFAM: uncharacterized protein UPF0065; KEGG: reu:Reut_B4520 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Aave_1070
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane.
 
    0.813
Aave_3272
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rme:Rmet_0825 protein of unknown function DUF112, transmembrane.
 
    0.810
Aave_4452
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB0377 hypothetical protein.
 
    0.808
Aave_3009
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane.
 
    0.700
Aave_1069
PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468.
 
    0.633
Aave_4451
PFAM: protein of unknown function DUF1468; KEGG: bpa:BPP0373 hypothetical protein.
 
    0.616
Aave_0177
PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; KEGG: rme:Rmet_4456 cupin 2, conserved barrel.
 
     0.549
Aave_0181
KEGG: rfr:Rfer_0459 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
       0.541
Aave_0179
PFAM: Integrase, catalytic region; KEGG: bpa:BPP1897 IS1002 transposase.
       0.444
Aave_0178
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4256 hypothetical protein; Belongs to the CoA-transferase III family.
  
    0.408
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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