Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_0183PFAM: beta-lactamase; KEGG: gvi:gll0595 probable beta-lactamase. (436 aa)    
Predicted Functional Partners:
Aave_0182
PFAM: beta-lactamase; KEGG: sal:Sala_0174 beta-lactamase.
 
  
 
0.974
Aave_2552
PFAM: beta-lactamase; KEGG: rpa:RPA0362 putative class A beta-lactamase precursor (penicillinase).
  
  
 
0.927
Aave_0184
KEGG: pol:Bpro_2305 hypothetical protein.
       0.527
Aave_0185
SMART: DEXDc2; helicase c2; KEGG: pfo:Pfl_2690 DEAD_2.
       0.514
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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