Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_0197KEGG: bxe:Bxe_B0621 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Aave_0198
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_5606 transcriptional regulator, LysR family.
       0.773
Aave_0313
KEGG: pol:Bpro_1153 hypothetical protein.
  
     0.598
Aave_1525
PFAM: Cbb3-type cytochrome oxidase component; KEGG: pol:Bpro_4303 Cbb3-type cytochrome oxidase component.
  
     0.570
Aave_4509
KEGG: pol:Bpro_0449 hypothetical protein.
  
     0.563
Aave_1927
KEGG: pol:Bpro_1726 hypothetical protein.
  
     0.550
Aave_1018
KEGG: rfr:Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS.
  
     0.545
Aave_0199
TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bur:Bcep18194_C7044 mandelate racemase/muconate lactonizing enzyme.
       0.535
Aave_0423
PFAM: PilT protein domain protein; KEGG: rfr:Rfer_0780 protein of unknown function DUF132.
  
     0.529
Aave_4356
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_3834 transcriptional regulator, AraC family.
  
     0.528
Aave_3116
PFAM: RDD domain containing protein; KEGG: pol:Bpro_2313 hypothetical protein.
  
     0.527
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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