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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0200PFAM: uncharacterized protein UPF0065; KEGG: rme:Rmet_4876 uncharacterized protein UPF0065. (349 aa)    
Predicted Functional Partners:
Aave_1070
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane.
    0.824
Aave_4452
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB0377 hypothetical protein.
    0.823
Aave_3272
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rme:Rmet_0825 protein of unknown function DUF112, transmembrane.
    0.820
Aave_3009
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane.
    0.796
Aave_1069
PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468.
 
    0.688
Aave_4451
PFAM: protein of unknown function DUF1468; KEGG: bpa:BPP0373 hypothetical protein.
 
    0.664
Aave_0199
TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bur:Bcep18194_C7044 mandelate racemase/muconate lactonizing enzyme.
       0.590
Aave_0201
Hypothetical protein.
       0.493
Aave_0197
KEGG: bxe:Bxe_B0621 hypothetical protein.
       0.416
Aave_0198
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_5606 transcriptional regulator, LysR family.
       0.416
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.