Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Aave_0228PFAM: uncharacterized protein UPF0065; KEGG: pol:Bpro_3194 uncharacterized protein UPF0065. (328 aa)    
Predicted Functional Partners:
Aave_1070
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane.
 
    0.822
Aave_3272
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rme:Rmet_0825 protein of unknown function DUF112, transmembrane.
 
    0.819
Aave_4452
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB0377 hypothetical protein.
 
    0.818
Aave_3009
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane.
 
    0.758
Aave_1069
PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468.
 
    0.635
Aave_4451
PFAM: protein of unknown function DUF1468; KEGG: bpa:BPP0373 hypothetical protein.
 
    0.579
Aave_0229
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2150 ATP-binding region, ATPase-like:histidine kinase A, N-terminal.
       0.495
Aave_0227
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: reu:Reut_B3731 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer.
       0.476
Aave_0230
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_2148 helix-turn-helix, fis-type.
       0.438
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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