Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_0251PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_0486 protein of unknown function DUF6, transmembrane. (264 aa)    
Predicted Functional Partners:
Aave_0252
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1.
       0.713
Aave_1882
KEGG: rfr:Rfer_1400 hypothetical protein.
  
     0.555
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.549
Aave_0435
Transporter, CPA2 family (2.A.37); PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4469 sodium/hydrogen exchanger; TC 2.A.37.
  
    0.547
Aave_3114
KEGG: rfr:Rfer_3320 putative transmembrane protein.
  
     0.537
Aave_0920
KEGG: pol:Bpro_1326 hypothetical protein.
  
     0.485
Aave_0250
PFAM: glutathione peroxidase; KEGG: rfr:Rfer_0484 glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.480
Aave_0254
KEGG: xcb:XC_1522 hypothetical protein.
       0.446
Aave_0329
PFAM: VanZ family protein; KEGG: rfr:Rfer_3803 VanZ like protein.
  
     0.437
Aave_3908
KEGG: pol:Bpro_1243 biotin synthesis protein BioC.
  
     0.426
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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