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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0331KEGG: pol:Bpro_0249 putative transmembrane protein. (213 aa)    
Predicted Functional Partners:
Aave_0328
PFAM: conserved hypothetical protein 701; KEGG: rfr:Rfer_3804 conserved hypothetical protein 701.
 
     0.811
Aave_0332
Penicillin-binding protein 6; PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pol:Bpro_0250 serine-type D-Ala-D-Ala carboxypeptidase; Serine peptidase; MEROPS family S11; Belongs to the peptidase S11 family.
 
     0.764
Aave_0329
PFAM: VanZ family protein; KEGG: rfr:Rfer_3803 VanZ like protein.
       0.711
Aave_0330
KEGG: rfr:Rfer_3802 ferredoxin-like.
 
     0.661
Aave_4542
TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_4583 glutamate--cysteine ligase GshA.
  
     0.541
Aave_0327
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: pol:Bpro_0245 porphobilinogen synthase; Belongs to the ALAD family.
       0.504
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.429
Aave_0326
PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_0244 Mg2+ transporter protein, CorA-like.
       0.424
Aave_1165
KEGG: pol:Bpro_3571 hypothetical protein.
 
     0.411
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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