Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_0384KEGG: pol:Bpro_0335 hypothetical protein. (182 aa)    
Predicted Functional Partners:
Aave_0382
KEGG: rfr:Rfer_0101 hypothetical protein.
 
     0.829
Aave_0383
KEGG: rpc:RPC_2939 alpha/beta hydrolase fold.
       0.825
Aave_2200
PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339.
  
     0.727
Aave_3116
PFAM: RDD domain containing protein; KEGG: pol:Bpro_2313 hypothetical protein.
  
     0.665
Aave_3901
KEGG: rfr:Rfer_1687 hypothetical protein.
  
     0.633
Aave_1440
KEGG: rfr:Rfer_2977 putative transmembrane protein.
  
     0.632
Aave_4223
KEGG: rfr:Rfer_0811 hypothetical protein.
  
     0.628
Aave_1441
PFAM: molybdopterin binding domain; KEGG: pol:Bpro_1806 molybdopterin binding domain.
  
     0.627
Aave_0166
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
     0.605
Aave_2461
KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
     0.546
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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