Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Aave_0451KEGG: bja:blr0521 hypothetical protein. (302 aa)    
Predicted Functional Partners:
Aave_0452
TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: bma:BMAA1630 type III secretion inner membrane protein SctV.
     
 0.827
Aave_0449
TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; KEGG: rso:RSp0860 hrp conserved hrcR transmembrane protein.
     
 0.681
Aave_0446
PFAM: Tir chaperone family protein; KEGG: bte:BTH_II0761 hypothetical protein.
     
 0.669
Aave_0453
TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; KEGG: xcb:XC_3012 HrcU protein.
     
 0.665
Aave_0448
TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ, family 3; KEGG: rso:RSp0859 hrp conserved hrcS transmembrane protein.
     
 0.658
Aave_0450
TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: bpm:BURPS1710b_A0677 type III secretion inner membrane protein SctQ.
     
 0.635
Aave_0018
KEGG: rso:RS03064 hypothetical protein.
  
     0.578
Aave_0447
Hypothetical protein.
       0.576
Aave_4632
KEGG: xcb:XC_1553 leucin rich protein.
  
     0.527
Aave_1057
KEGG: ade:Adeh_0323 hypothetical protein.
  
     0.511
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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