Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_0484PFAM: phage integrase family protein; KEGG: psp:PSPPH_0667 prophage PSPPH01, site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. (421 aa)    
Predicted Functional Partners:
Aave_0567
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: xac:XAC2204 prophage regulatory protein.
 
  
 0.622
Aave_3362
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: xac:XAC2180 hypothetical protein.
 
  
 0.402
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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