STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0529PFAM: Lytic transglycosylase, catalytic; KEGG: xac:XAC2256 hypothetical protein. (202 aa)    
Predicted Functional Partners:
Aave_0528
KEGG: xac:XAC2257 hypothetical protein.
 
     0.962
Aave_0527
KEGG: eba:ebA2421 hypothetical protein.
 
   
 0.956
Aave_0526
KEGG: xac:XAC2260 hypothetical protein.
 
     0.955
Aave_0530
KEGG: xac:XAC2255 hypothetical protein.
 
     0.955
Aave_0532
KEGG: xac:XAC2253 PilL protein.
 
     0.948
Aave_2764
KEGG: eba:ebA403 hypothetical protein.
 
   
 0.801
Aave_2766
KEGG: eba:ebA398 hypothetical protein.
 
     0.790
Aave_0502
KEGG: xac:XAC2274 hypothetical protein.
 
   
 0.789
Aave_0531
KEGG: eba:ebA2426 hypothetical protein.
       0.787
Aave_0503
KEGG: xcb:XC_2032 hypothetical protein.
 
     0.785
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.