Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0533KEGG: xfa:XF2428 hypothetical protein. (353 aa)    
Predicted Functional Partners:
Aave_0534
Hypothetical protein.
       0.568
Aave_0531
KEGG: eba:ebA2426 hypothetical protein.
       0.525
Aave_0532
KEGG: xac:XAC2253 PilL protein.
       0.525
Aave_0526
KEGG: xac:XAC2260 hypothetical protein.
       0.521
Aave_0527
KEGG: eba:ebA2421 hypothetical protein.
       0.521
Aave_0528
KEGG: xac:XAC2257 hypothetical protein.
       0.521
Aave_0529
PFAM: Lytic transglycosylase, catalytic; KEGG: xac:XAC2256 hypothetical protein.
       0.521
Aave_0530
KEGG: xac:XAC2255 hypothetical protein.
       0.521
Aave_0525
PFAM: SEFIR domain protein; KEGG: shm:Shewmr7_1857 SEFIR domain protein.
       0.406
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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