Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Aave_0649 | Aave_0651 | KEGG: rfr:Rfer_3572 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein. | PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_1861 MgtC/SapB transporter. | 0.416 |
Aave_0650 | Aave_0651 | Hypothetical protein. | PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_1861 MgtC/SapB transporter. | 0.551 |
Aave_0651 | Aave_0649 | PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_1861 MgtC/SapB transporter. | KEGG: rfr:Rfer_3572 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein. | 0.416 |
Aave_0651 | Aave_0650 | PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_1861 MgtC/SapB transporter. | Hypothetical protein. | 0.551 |
Aave_0651 | Aave_4383 | PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_1861 MgtC/SapB transporter. | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. | 0.432 |
Aave_4383 | Aave_0651 | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. | PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_1861 MgtC/SapB transporter. | 0.432 |