Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_0652KEGG: pol:Bpro_0441 hypothetical protein. (274 aa)    
Predicted Functional Partners:
Aave_1803
KEGG: pol:Bpro_3507 TRAP transporter solute receptor, TAXI family.
  
    0.559
Aave_4642
KEGG: rfr:Rfer_3864 hypothetical protein.
  
     0.556
Aave_2640
KEGG: rfr:Rfer_2897 hypothetical protein.
  
     0.530
Aave_2641
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.465
Aave_2869
KEGG: rfr:Rfer_2490 putative glutathione S-transferase-related protein.
  
     0.454
Aave_0920
KEGG: pol:Bpro_1326 hypothetical protein.
  
     0.451
Aave_0924
TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H.
  
     0.448
Aave_0809
KEGG: pol:Bpro_1065 hypothetical protein.
  
     0.447
Aave_0245
KEGG: pol:Bpro_1033 hypothetical protein.
  
     0.405
Aave_2800
PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_3552 OmpA/MotB.
  
 
   0.405
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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