Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0677KEGG: rme:Rmet_3038 hypothetical protein. (116 aa)    
Predicted Functional Partners:
Aave_0684
KEGG: rso:RSc2608 hypothetical/unknown protein.
 
     0.779
Aave_0688
Plasmid segregation centromere-binding protein ParG; KEGG: rso:RSc2604 hypothetical/unknown protein.
 
     0.769
Aave_0691
KEGG: rso:RSc2601 hypothetical/unknown protein.
  
     0.756
Aave_0690
Conjugation peptidase TraF; KEGG: rso:RSc2602 probable conjugal transfer TRAF transmembrane protein; Serine peptidase; MEROPS family S26C.
 
     0.754
Aave_0685
KEGG: rso:RSc2607 hypothetical protein.
 
     0.753
Aave_0736
KEGG: rso:RSc2574 hypothetical/unknown protein.
  
     0.748
Aave_0680
PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_1245 ParB-like nuclease.
 
     0.746
Aave_0689
KEGG: rso:RSc2603 hypothetical/unknown protein.
 
     0.729
Aave_0735
PFAM: conjugation TrbI family protein; KEGG: rso:RSc2575 probable conjugal transfer trbi transmembrane protein.
  
     0.717
Aave_0725
PFAM: CopG domain protein DNA-binding domain protein; KEGG: rme:Rmet_1549 CopG-like DNA-binding.
  
     0.705
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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