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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0701Hypothetical protein; KEGG: eca:ECA2224 putative transporter. (105 aa)    
Predicted Functional Partners:
Aave_0704
KEGG: sco:SCO4462 integral membrane protein.
  
     0.761
Aave_0700
PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_5034 major facilitator superfamily MFS_1.
 
     0.518
Aave_3049
PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB4088 probable transporter.
  
     0.482
kdgT
2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.
  
     0.441
Aave_2781
PFAM: NADPH-dependent FMN reductase; KEGG: rme:Rmet_5075 NADPH-dependent FMN reductase.
  
     0.423
Aave_0879
PFAM: NADPH-dependent FMN reductase; KEGG: bcn:Bcen_5790 FMN reductase.
  
     0.412
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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