Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Aave_0708PFAM: Integrase, catalytic region; KEGG: mxa:MXAN_4473 transposase orfB, IS3 family. (285 aa)    
Predicted Functional Partners:
Aave_0709
PFAM: transposase IS3/IS911 family protein; KEGG: mxa:MXAN_1716 transposase orfA, IS3 family.
  
    0.680
Aave_0710
PFAM: transposase IS66; KEGG: rfr:Rfer_2711 transposase IS66.
     
 0.577
Aave_0711
PFAM: IS66 Orf2 family protein; KEGG: ppu:PP_4438 ISPpu14, transposase Orf2.
     
 0.424
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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