STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0710PFAM: transposase IS66; KEGG: rfr:Rfer_2711 transposase IS66. (242 aa)    
Predicted Functional Partners:
Aave_0711
PFAM: IS66 Orf2 family protein; KEGG: ppu:PP_4438 ISPpu14, transposase Orf2.
 
   
 0.900
Aave_0712
PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein.
 
   
 0.862
Aave_0709
PFAM: transposase IS3/IS911 family protein; KEGG: mxa:MXAN_1716 transposase orfA, IS3 family.
     
 0.628
Aave_0708
PFAM: Integrase, catalytic region; KEGG: mxa:MXAN_4473 transposase orfB, IS3 family.
     
 0.573
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.