Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Aave_0761PFAM: DoxX family protein; KEGG: rme:Rmet_5314 DoxX. (132 aa)    
Predicted Functional Partners:
Aave_0760
PFAM: Amidohydrolase 3; KEGG: bpm:BURPS1710b_A1987 RC145.
 
     0.941
Aave_0759
PFAM: isochorismatase hydrolase; KEGG: cvi:CV1284 probable hydrolase.
 
    0.885
Aave_0762
PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: atc:AGR_L_1740 hypothetical protein.
 
     0.857
Aave_0763
KEGG: bbr:BB0777 hypothetical protein.
       0.645
Aave_0764
KEGG: bbr:BB0776 hypothetical protein.
       0.645
Aave_0758
PFAM: pirin domain protein; KEGG: pfo:Pfl_1955 pirin-like; Belongs to the pirin family.
  
  
 0.547
Aave_4631
PFAM: leucine-rich repeat protein; KEGG: xcb:XC_1553 leucin rich protein.
    
  0.530
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.514
Aave_3464
KEGG: reu:Reut_A2880 4-oxalocrotonate tautomerase.
  
     0.503
Aave_4447
PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: xcb:XC_0989 hypothetical protein.
  
     0.443
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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