STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0789KEGG: pol:Bpro_2821 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Aave_0788
PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: pol:Bpro_2822 peptidoglycan-binding domain 1.
 
     0.930
Aave_4210
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.564
Aave_2889
Hypothetical protein; KEGG: rso:RSc0874 probable transmembrane protein.
  
     0.522
Aave_4098
Hypothetical protein; KEGG: rso:RSc0874 probable transmembrane protein.
  
     0.522
Aave_0787
PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_0604 AMP-dependent synthetase and ligase.
       0.456
Aave_0786
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: pol:Bpro_0603 ABC transporter-related protein; TC 3.A.1.4.-.
       0.404
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.