Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Aave_0862KEGG: rfr:Rfer_3349 histone protein. (212 aa)    
Predicted Functional Partners:
Aave_4689
KEGG: pol:Bpro_0388 putative lipoprotein transmembrane.
  
     0.762
Aave_4761
KEGG: pol:Bpro_4860 hypothetical protein.
  
     0.698
Aave_1190
PFAM: Anti sigma-E protein RseA family protein; KEGG: rfr:Rfer_1737 anti sigma-E protein, RseA, Burkholderiaceae specific.
  
     0.682
Aave_2861
KEGG: pol:Bpro_2100 hypothetical protein.
  
     0.681
Aave_4692
PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport.
  
     0.673
Aave_3309
TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin.
 
  
 0.671
Aave_4187
PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase.
  
     0.660
Aave_1018
KEGG: rfr:Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS.
  
     0.656
Aave_3069
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: bxe:Bxe_A0384 putative sulfur transfer protein involved in thiamine biosynthesis, ThiS.
  
     0.640
Aave_1125
PFAM: porin, Gram-negative type; KEGG: rso:RS00714 probable porin precursor transmembrane protein.
 
     0.633
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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