STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1007PFAM: protein of unknown function DUF1568; KEGG: rfr:Rfer_2932 protein of unknown function DUF1568. (234 aa)    
Predicted Functional Partners:
Aave_1005
PFAM: protein of unknown function DUF1415; KEGG: cvi:CV3207 hypothetical protein.
       0.682
Aave_1006
KEGG: rfr:Rfer_2930 hypothetical protein.
       0.682
Aave_1008
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rfr:Rfer_2933 glutamate synthase (ferredoxin).
       0.673
Aave_1004
KEGG: rfr:Rfer_2927 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; Belongs to the dGTPase family. Type 2 subfamily.
       0.588
ureC
Urease; TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; KEGG: pol:Bpro_1350 urease, alpha subunit; Metallo peptidase; MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
    
   0.571
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.558
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.485
Aave_0998
PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO.
 
     0.473
Aave_0997
PFAM: Fimbrial assembly family protein; KEGG: rfr:Rfer_2920 fimbrial assembly.
 
     0.465
Aave_1009
TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_0792 glutamate synthases, NADH/NADPH, small subunit.
       0.464
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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