Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Aave_1040KEGG: rme:Rmet_4158 putative transmembrane protein. (467 aa)    
Predicted Functional Partners:
Aave_1041
KEGG: rso:RSc2274 putative lipoprotein.
 
  
 0.979
Aave_1039
KEGG: rso:RSc2272 probable transmembrane protein.
 
  
 0.972
Aave_1037
KEGG: rme:Rmet_4161 putative transmembrane protein.
 
   
 0.971
Aave_1038
PFAM: glycosyl transferase, group 1; KEGG: rso:RSc2271 hypothetical protein.
 
     0.964
Aave_1042
PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc2275 putative signal peptide protein.
 
   
 0.957
Aave_1043
KEGG: rso:RSc2276 putative signal peptide protein.
 
   
 0.949
Aave_1036
KEGG: rxy:Rxyl_2672 hypothetical protein.
 
     0.785
Aave_1035
KEGG: rso:RS01997 hypothetical signal peptide protein.
 
     0.666
Aave_3996
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: ppu:PP_3761 sensor histidine kinase/response regulator.
   
 
 0.473
Aave_0413
PFAM: PsiF repeat protein; KEGG: rfr:Rfer_0772 PsiF.
  
     0.443
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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