Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Aave_1069PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468. (162 aa)    
Predicted Functional Partners:
Aave_4451
PFAM: protein of unknown function DUF1468; KEGG: bpa:BPP0373 hypothetical protein.
  
  
 
0.921
Aave_3010
KEGG: pol:Bpro_2010 hypothetical protein.
     
  0.900
Aave_1070
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane.
  
  
 0.855
Aave_0780
PFAM: uncharacterized protein UPF0065; KEGG: pol:Bpro_0597 uncharacterized protein UPF0065.
 
    0.781
Aave_3895
PFAM: uncharacterized protein UPF0065; KEGG: rfr:Rfer_1691 uncharacterized protein UPF0065.
 
    0.761
Aave_1975
PFAM: uncharacterized protein UPF0065; KEGG: rfr:Rfer_3300 uncharacterized protein UPF0065.
 
    0.759
Aave_0779
PFAM: uncharacterized protein UPF0065; KEGG: pol:Bpro_0596 uncharacterized protein UPF0065.
 
    0.755
Aave_4634
PFAM: uncharacterized protein UPF0065; KEGG: bbr:BB1948 hypothetical protein.
 
    0.713
Aave_4503
PFAM: uncharacterized protein UPF0065; KEGG: reu:Reut_A0548 hypothetical protein.
 
    0.704
Aave_1312
PFAM: uncharacterized protein UPF0065; KEGG: pol:Bpro_3194 uncharacterized protein UPF0065.
 
    0.702
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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