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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1111PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase. (322 aa)    
Predicted Functional Partners:
Aave_1110
KEGG: pol:Bpro_1423 amidase, hydantoinase/carbamoylase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein.
   
 0.968
Aave_1097
PFAM: Asp/Glu racemase; KEGG: bxe:Bxe_A1925 putative hydantoin racemase.
 
  
  0.958
Aave_1556
PFAM: Asp/Glu racemase; KEGG: pol:Bpro_1006 Asp/Glu racemase.
 
  
  0.954
Aave_1116
PFAM: Transthyretin; KEGG: pol:Bpro_1426 transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
    0.861
Aave_1109
TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
 
     0.834
Aave_1112
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1425 transcriptional regulator, GntR family.
 
    0.796
Aave_1119
PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 putative transmembrane protein.
 
    0.787
Aave_1129
PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase.
 
     0.691
Aave_1118
PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182.
 
     0.655
Aave_1130
PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding.
 
     0.653
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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