STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1347Hypothetical protein. (77 aa)    
Predicted Functional Partners:
Aave_1346
PFAM: Endoribonuclease L-PSP; KEGG: rfr:Rfer_2506 endoribonuclease L-PSP.
       0.564
Aave_1348
Hypothetical protein.
       0.559
Aave_1349
Conserved hypothetical protein; KEGG: psb:Psyr_1160 similar to uncharacterized protein conserved in bacteria.
       0.559
Aave_1345
TIGRFAM: pyridoxal kinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: dge:Dgeo_0144 pyridoxal kinase.
       0.546
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.