STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1370PFAM: PepSY-associated TM helix domain protein; KEGG: bbr:BB3604 putative iron uptake protein. (562 aa)    
Predicted Functional Partners:
Aave_1371
KEGG: bbr:BB3605 putative iron uptake protein.
 
    0.953
Aave_1372
PFAM: TonB-dependent receptor, plug; KEGG: rso:RSc0800 putative ferrisiderophore receptor signal peptide protein.
 
  
 0.840
Aave_1369
KEGG: pfl:PFL_0987 hypothetical protein.
  
    0.824
Aave_3007
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bbr:BB1846 putative ferric siderophore receptor.
 
  
 0.699
Aave_1368
KEGG: bxe:Bxe_C0724 hypothetical protein.
 
    0.654
Aave_1367
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bbr:BB1785 putative ferrisiderophore receptor.
 
   
 0.649
Aave_4788
Flavodoxin/nitric oxide synthase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1028 sulfite reductase flavoprotein alpha-component; iron-regulated membrane protein.
  
     0.622
Aave_2807
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pol:Bpro_1683 TonB-dependent receptor.
 
   
 0.539
Aave_2242
KEGG: xcb:XC_3476 hypothetical protein.
  
     0.512
Aave_2054
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bur:Bcep18194_A4489 TonB-dependent siderophore receptor.
 
   
 0.472
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.