STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1495PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rru:Rru_A2477 substrate-binding region of ABC-type glycine betaine transport system. (347 aa)    
Predicted Functional Partners:
Aave_1496
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01362 ABC-type proline/glycine betaine transport system, permease component.
 
 0.999
Aave_1497
KEGG: hch:HCH_01361 ABC-type proline/glycine betaine transport system, ATPase component; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter-related protein; SMART: AAA ATPase.
 
 0.999
Aave_1493
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfv:SFV_2140 transcriptional response regulatory protein.
       0.486
Aave_1494
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RS05645 probable two-component sensor histidine kinase transcription regulator protein.
       0.486
Aave_2789
PFAM: ABC-2 type transporter; KEGG: mfa:Mfla_2239 ABC-2.
  
  
  0.456
Aave_4072
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3903 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; TC 3.A.1.3.-.
  
  
 0.448
Aave_1020
PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0800 ABC-2.
  
  
  0.435
Aave_0306
PFAM: protein of unknown function DUF140; KEGG: pol:Bpro_0230 protein of unknown function DUF140.
     
 0.410
Aave_0913
PFAM: ABC transporter-related protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1595 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
    
 0.410
Aave_1014
PFAM: protein of unknown function DUF140; KEGG: pol:Bpro_0794 protein of unknown function DUF140.
     
 0.410
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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