Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1550KEGG: ade:Adeh_2155 hypothetical protein. (128 aa)    
Predicted Functional Partners:
Aave_1549
KEGG: gvi:gll2767 hypothetical protein.
 
     0.952
Aave_4018
Hypothetical protein.
  
     0.524
Aave_1548
KEGG: ecs:ECs3487 hypothetical protein.
       0.516
Aave_1551
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pst:PSPTO_1056 oxidoreductase, short chain dehydrogenase/reductase family.
       0.455
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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