STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1699KEGG: ret:RHE_CH01093 putative terminase large subunit protein. (539 aa)    
Predicted Functional Partners:
Aave_1700
KEGG: ngo:NGO1097 hypothetical protein, putative phage associated protein.
 
     0.812
Aave_1698
PFAM: Terminase small subunit; KEGG: sit:TM1040_0800 terminase small subunit.
 
  
 0.767
Aave_1690
Uncharacterized phage-encoded protein; KEGG: ypn:YPN_1572 phage regulatory protein.
 
     0.491
Aave_1691
Hypothetical protein; KEGG: bbr:BB1683 phage-related hypothetical protein.
  
  
 0.485
Aave_2352
KEGG: sec:SC2611 hypothetical protein.
  
  
 0.444
Aave_2365
KEGG: bhe:BH14010 expressed protein.
 
     0.432
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.