Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1730Hypothetical protein. (121 aa)    
Predicted Functional Partners:
Aave_1731
KEGG: pae:PA0631 hypothetical protein.
       0.776
Aave_1732
KEGG: sty:HCM2.0024c hypothetical protein.
       0.773
Aave_1733
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2249 PpiC-type peptidyl-prolyl cis-trans isomerase.
       0.448
Aave_1729
KEGG: yps:YPTB1805 probable endolysin (lysis protein) (lysozyme).
       0.418
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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