Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_1787KEGG: ppu:PP_1583 structural protein P5, putative. (138 aa)    
Predicted Functional Partners:
Aave_1788
KEGG: psp:PSPPH_0656 hypothetical protein.
       0.773
Aave_1789
Hypothetical protein.
       0.773
Aave_1782
PFAM: Prophage tail length tape measure; KEGG: rso:RSc1690 probable phage HK97 tail length TAPE measure-related protein.
 
     0.690
Aave_1784
Hypothetical protein; KEGG: stm:STM1049 probable tail fiber protein.
       0.589
Aave_1783
PFAM: Carbohydrate-binding family V/XII; KEGG: rsp:RSP_3763 hypothetical protein.
       0.584
Aave_1785
KEGG: rno:678915 hypothetical protein LOC678915.
       0.584
Aave_1786
KEGG: nmu:Nmul_A1447 hypothetical protein.
       0.584
Aave_1781
KEGG: bpe:BP3367 hypothetical protein.
       0.438
Aave_1790
Hypothetical protein.
       0.437
Aave_1791
KEGG: pae:PA0631 hypothetical protein.
       0.419
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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