STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1869PFAM: protein of unknown function DUF72; KEGG: bpm:BURPS1710b_1059 hypothetical protein. (390 aa)    
Predicted Functional Partners:
Aave_1870
PFAM: Integrase, catalytic region; KEGG: bpa:BPP2353 IS1002 transposase.
       0.661
Aave_4302
KEGG: dar:Daro_0588 hypothetical protein.
  
     0.647
Aave_1871
PFAM: protein of unknown function DUF1304; KEGG: cvi:CV1434 hypothetical protein.
       0.474
Aave_2835
KEGG: bbr:BB3068 hypothetical protein.
  
     0.437
Aave_3060
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: bur:Bcep18194_B3161 FHA domain containing protein.
  
     0.429
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.