STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_1908PFAM: transposase, IS4 family protein; KEGG: cvi:CV0957 TIS1421-transposase protein B. (173 aa)    
Predicted Functional Partners:
Aave_1905
Hypothetical protein; KEGG: rso:RSp0990 probable TIS1421-transposase orfA protein.
 
     0.854
Aave_0523
KEGG: rso:RSp0990 probable TIS1421-transposase orfA protein.
     0.775
Aave_0848
KEGG: rso:RSp0990 probable TIS1421-transposase orfA protein.
     0.775
Aave_3789
KEGG: rso:RSp0990 probable TIS1421-transposase orfA protein.
     0.775
Aave_1906
KEGG: eba:ebA5933 transposition helper protein.
       0.701
Aave_1907
PFAM: Integrase, catalytic region; KEGG: eba:ebA5932 transposase.
       0.701
Aave_1075
Hypothetical protein; KEGG: mxa:MXAN_5466 peptidase, S1E (streptogrisin A) subfamily.
  
     0.439
Aave_3809
PFAM: 3-oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; KEGG: bxe:Bxe_C0417 hypothetical protein.
  
     0.427
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.