Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_1925KEGG: pae:PA4370 putative iron-regulated protein. (407 aa)    
Predicted Functional Partners:
Aave_1924
PFAM: protein of unknown function DUF1111; KEGG: pae:PA4371 hypothetical protein.
 
    0.993
Aave_1923
KEGG: hch:HCH_00181 predicted periplasmic lipoprotein.
 
    0.977
Aave_1922
KEGG: dar:Daro_1057 twin-arginine translocation pathway signal.
 
    0.961
Aave_2866
PFAM: extracellular solute-binding protein, family 1; KEGG: bxe:Bxe_C1181 ABC Fe+3 siderophore transporter, periplasmic ligand binding protein.
  
    0.816
Aave_3310
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3050 hypothetical protein.
  
    0.724
Aave_1368
KEGG: bxe:Bxe_C0724 hypothetical protein.
   
    0.695
Aave_3313
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1.
   
    0.675
Aave_4551
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rfr:Rfer_0757 biopolymer transport protein ExbD/TolR.
   
    0.675
Aave_3311
Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like; TC 2.C.1.1.1.
   
    0.503
Aave_1921
PFAM: Collagen triple helix repeat; KEGG: dsy:DSY0622 hypothetical protein.
       0.488
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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