Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_1950PFAM: uncharacterized protein UPF0065; KEGG: rfr:Rfer_3194 uncharacterized protein UPF0065. (327 aa)    
Predicted Functional Partners:
Aave_1070
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane.
  
    0.778
Aave_3272
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rme:Rmet_0825 protein of unknown function DUF112, transmembrane.
  
    0.770
Aave_4452
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB0377 hypothetical protein.
  
    0.770
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: rfr:Rfer_1710 argininosuccinate lyase.
       0.741
Aave_3009
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane.
  
    0.700
Aave_3926
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: ppu:PP_3947 isoquinoline 1-oxidoreductase, putative.
   
    0.696
Aave_3500
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: rfr:Rfer_3381 twin-arginine translocation pathway signal; TC 3.A.1.4.-.
   
    0.636
Aave_3816
KEGG: bxe:Bxe_C0435 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; TC 3.A.1.4.-.
   
    0.636
Aave_1069
PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468.
 
    0.626
Aave_4451
PFAM: protein of unknown function DUF1468; KEGG: bpa:BPP0373 hypothetical protein.
 
    0.591
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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