STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2003KEGG: dde:Dde_2399 hypothetical protein. (254 aa)    
Predicted Functional Partners:
Aave_2004
KEGG: mfa:Mfla_2213 hypothetical protein.
 
     0.951
Aave_0965
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: eba:ebA1575 hypothetical protein.
  
     0.598
Aave_1721
KEGG: ngo:NGO1092 hypothetical protein, putative phage associated protein.
  
     0.538
Aave_4148
KEGG: eba:ebA1598 hypothetical protein.
  
     0.515
Aave_2002
PFAM: protein of unknown function UPF0118; KEGG: pol:Bpro_3669 protein of unknown function UPF0118.
       0.501
Aave_1782
PFAM: Prophage tail length tape measure; KEGG: rso:RSc1690 probable phage HK97 tail length TAPE measure-related protein.
  
     0.472
Aave_1628
PFAM: Prophage tail length tape measure; KEGG: rso:RSc1690 probable phage HK97 tail length TAPE measure-related protein.
  
     0.450
Aave_0947
KEGG: eba:ebA1563 hypothetical protein.
  
     0.440
Aave_4549
Putative phage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: son:SO2652 prophage MuSo2, transcriptional regulator, Cro/CI family.
  
     0.405
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.