Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_2012PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_2878 Rieske (2Fe-2S) protein. (379 aa)    
Predicted Functional Partners:
Aave_0166
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.909
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.778
Aave_1977
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_3790 oxidoreductase FAD/NAD(P)-binding.
 
  
 0.730
Aave_2014
Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_1746 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
     
 0.693
Aave_2011
KEGG: pol:Bpro_1743 putative transmembrane protein.
 
     0.682
Aave_3309
TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin.
  
     0.679
Aave_0843
PFAM: ribonuclease II; KEGG: pol:Bpro_1089 ribonuclease II.
  
     0.666
Aave_4527
KEGG: rfr:Rfer_3589 putative proline rich signal peptide protein.
  
     0.654
Aave_0265
KEGG: rfr:Rfer_0507 hypothetical protein.
  
     0.646
lptE
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.613
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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