STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2012PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_2878 Rieske (2Fe-2S) protein. (379 aa)    
Predicted Functional Partners:
Aave_0305
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pol:Bpro_0229 glucose-methanol-choline oxidoreductase.
    
 0.912
Aave_0166
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.894
Aave_0219
Phospholipase C; PFAM: phosphoesterase; protein of unknown function DUF756; KEGG: bcn:Bcen_5326 twin-arginine translocation pathway signal.
   
 
  0.805
Aave_1377
Phospholipase C; PFAM: phosphoesterase; protein of unknown function DUF756; KEGG: bpm:BURPS1710b_A1577 phospholipase C.
   
 
  0.805
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
Aave_4476
Phospholipase A1; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
  0.800
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.783
Aave_1977
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_3790 oxidoreductase FAD/NAD(P)-binding.
 
  
 0.771
Aave_2014
Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_1746 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.698
Aave_3309
TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin.
  
     0.679
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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