Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2129KEGG: bxe:Bxe_A4427 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Aave_2128
KEGG: bxe:Bxe_A4428 hypothetical protein.
 
    0.948
Aave_2127
PFAM: Rhs element Vgr protein; KEGG: pae:PA0095 hypothetical protein.
 
   
 0.927
Aave_2130
KEGG: bxe:Bxe_A4426 rhs family protein.
 
     0.804
Aave_3484
KEGG: rsp:RSP_3467 hypothetical protein.
 
    0.783
Aave_2048
PFAM: Gp5 domain protein; KEGG: pae:PA2685 hypothetical protein.
 
   
 0.779
Aave_2738
KEGG: gsu:GSU3186 hypothetical protein.
 
    0.775
Aave_2131
Hypothetical protein.
       0.773
Aave_3786
KEGG: gsu:GSU3186 hypothetical protein.
 
    0.770
Aave_2132
Hypothetical protein.
       0.762
Aave_3486
PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: bps:BPSS2093 hypothetical protein.
 
   
 0.708
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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