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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2162PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3147 protein of unknown function DUF58. (339 aa)    
Predicted Functional Partners:
Aave_2161
PFAM: transglutaminase domain protein; KEGG: rfr:Rfer_2531 transglutaminase-like.
 
  
 0.963
Aave_2163
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rfr:Rfer_2529 AAA_3 ATPase.
 
  
 0.815
Aave_4687
PFAM: Peptidoglycan-binding LysM; KEGG: rfr:Rfer_3861 peptidoglycan-binding LysM.
 
     0.761
Aave_1218
KEGG: pol:Bpro_3613 putative transmembrane protein.
 
    0.760
Aave_0999
PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ.
 
     0.752
Aave_0997
PFAM: Fimbrial assembly family protein; KEGG: rfr:Rfer_2920 fimbrial assembly.
 
     0.750
Aave_0998
PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO.
 
     0.747
Aave_3410
PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ.
 
     0.736
Aave_4642
KEGG: rfr:Rfer_3864 hypothetical protein.
  
     0.729
Aave_0996
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
 
     0.725
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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