Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_2164PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3145 histone deacetylase superfamily. (318 aa)    
Predicted Functional Partners:
Aave_4628
PFAM: nuclear protein SET; SMART: SET-related domain protein; KEGG: rfr:Rfer_3954 nuclear protein SET.
 
 0.822
Aave_0097
PFAM: Calcium-binding EF-hand-containing protein; KEGG: pol:Bpro_0112 acid shock protein-like.
    
 0.743
Aave_3976
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; KEGG: gbe:GbCGDNIH1_1190 hypothetical secreted protein.
    
 0.743
Aave_2165
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A2554 enoyl-CoA hydratase/isomerase.
 
 
   0.733
Aave_3136
PFAM: Ankyrin; KEGG: xcv:XCV4121 putative secreted protein.
   
 0.723
Aave_3408
PFAM: Ankyrin; KEGG: pol:Bpro_2515 ankyrin.
   
 0.723
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.718
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 0.707
Aave_2316
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.685
Aave_2317
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.685
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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