Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Aave_2235PFAM: protein of unknown function DUF427; KEGG: pol:Bpro_3460 protein of unknown function DUF427. (93 aa)    
Predicted Functional Partners:
Aave_3091
KEGG: rfr:Rfer_1610 putative uncharacterized conserved protein.
 
     0.622
Aave_2236
KEGG: cvi:CV0473 probable sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.517
Aave_2237
SMART: extracellular solute-binding protein, family 3; KEGG: mag:amb2290 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; TC 3.A.1.3.-.
       0.517
Aave_3090
PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein.
 
     0.474
Aave_2238
PFAM: response regulator receiver; KEGG: mfa:Mfla_1281 response regulator receiver domain protein (CheY-like).
       0.444
Aave_2233
KEGG: pol:Bpro_3072 hypothetical protein.
 
     0.438
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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