STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2259Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: mxa:MXAN_3250 senescence marker protein-30 family protein. (315 aa)    
Predicted Functional Partners:
Aave_2258
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7191 putative oxidoreductase.
 
 
 0.969
Aave_0754
D-xylonate dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: ret:RHE_CH03347 probable dihydroxy-acid dehydratase protein; Belongs to the IlvD/Edd family.
 
  
 0.931
Aave_0235
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rfr:Rfer_0479 senescence marker protein-30 (SMP-30).
  
  
 
0.927
Aave_2591
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pst:PSPTO_1052 senescence marker protein-30 family protein.
  
  
 
0.923
Aave_2260
PFAM: Aldose 1-epimerase; KEGG: bur:Bcep18194_A3707 aldose 1-epimerase.
 
   
 0.782
Aave_2246
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: psb:Psyr_1987 2-keto-3-deoxy-galactonokinase.
 
   
 0.613
Aave_2244
Galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: psp:PSPPH_1958 galactonate dehydratase.
 
   
 0.485
Aave_2596
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rso:RS05371 putative gluconolactonase precursor (D-glucono-delta-lactone lactonohydrolase) protein.
  
     0.444
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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